The pitch of your kick is definitely important.
OK.... this is going to sound esoteric but bear with me.
The kick's triggering frequency is not necessarily relative to the key of your track. It has more to do with the fact that the harmonic content of the kick must be in line with the general resonance of your track, especially with the non-fundamental frequencies that your bassline produces.
The reason behind this has to do with the fact that the kick-drum itsself hasn't got a fundamental frequency. Its actual frequency decays over time. Regardless of the method by witch it was synthesized (if it was synthesized that is) the waveform of a kick usually looks like a burst of higher frequencues followed by a steady decay in pitch.
But with most good kicks there are usually some suttle frequencies interacting with that basic decaying pitch, and it is these frequencies that are important.
This is why some kicks will just work for a track and other's simply wont. It all depends on the environment the sample was recorded in, or the method by which it was generated.
What can help sometimes to make a kick fit with a track is to filter out some of the higher frequency noise, created mostly by reverberation (using a noise filter). This dries out the kick to an extent, but still keeps most of the harmonic content intact.
What you then do is apply appropriate EQ and reverb to the kick in the track itsself to make it fit snuggly with your other sounds.
Alternatively you can build your track up around your kick. Especially when you synthesize most of your sounds on the fly. You can adjust the sounds you generate to compliment it. Just remember that every sound you add actually needs to fit with the others in the same complimentary way if you want a really tight mix.
This is where the minimalistic approach comes in really handy. You have a couple of sounds that fit togther really smoothly and maximise on the variations you can get from them. Rather than continuously layering new sounds on top of each other that may or may not have a negative effective on the track's overall environement.
OK.. now for the quick rule of thumb I follow when selecting the pitch of my kick....
I simply pick the frequency that produces the most powerful sound and work with that.
Too low a pitch and you get very little but detached rumbling... Too high and you get an irritating little high pich ploink. So just pick somewhere in the middle where you feel your kick is generating maximum oomph.